Paper on parameter estimation with deep neural networks accepted in <IEEE Transactions on Neural Networks and Learning Systems>

Published Nov. 26, 2020 - Quantitative Research Methods

BayesFlow: Learning complex stochastic models with invertible neural networks by Stefan T. Radev, Ulf K. Mertens, Andreass Voss, Lynton Ardizzone, Ullrich Köthe


Estimating the parameters of mathematical models is a common problem in almost all branches of science. However, this problem can prove notably difficult when processes and model descriptions become increasingly complex and an explicit likelihood function is not available. With this work, we propose a novel method for globally amortized Bayesian inference based on invertible neural networks which we call BayesFlow. The method uses simulation to learn a global estimator for the probabilistic mapping from observed data to underlying model parameters. A neural network pre-trained in this way can then, without additional training or optimization, infer full posteriors on arbitrary many real data sets involving the same model family. In addition, our method incorporates a summary network trained to embed the observed data into maximally informative summary statistics. Learning summary statistics from data makes the method applicable to modeling scenarios where standard inference techniques with hand-crafted summary statistics fail. We demonstrate the utility of BayesFlow on challenging intractable models from population dynamics, epidemiology, cognitive science and ecology. We argue that BayesFlow provides a general framework for building reusable Bayesian parameter estimation machines for any process model from which data can be simulated.

Link: Preprint availabe here

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